{{Infobox software | name = Yet Another Scientific Artificial Reality Application | logo = <!-- Image name is enough --> | logo alt = | screenshot = <!-- Image name is enough --> | caption = | screenshot alt = | collapsible = | author = Elmar Krieger<br />Jacobus van Meel | developer = YASARA Biosciences<br />WHAT IF Foundation<br />Spronk NMR Consultancy | released = {{Start date and age|1993|11|df=yes}} | latest release version = {{wikidata|property|preferred|P348|P548=Q2804309|P348}} | latest release date = {{wikidata|qualifier|preferred|P348|P548=Q2804309|P577}} | latest preview version = | latest preview date = <!-- {{Start date and age|YYYY|MM|DD|df=yes/no}} --> | programming language = C, assembly, Python | operating system = Windows, Linux, OS X | platform = x86 | size = | language = English | language count = <!-- Number only --> | language footnote = | genre = Molecular modelling | license = Proprietary, free version for elementary structure work | alexa = | website = {{URL|www.yasara.org}} | standard = | AsOf = }}
'''Yet Another Scientific Artificial Reality Application''' ('''YASARA''') is a computer program for molecular visualising, modelling, and dynamics. It has many scientific uses, as expressed by the large number of scientific articles mentioning the software.<ref>[http://www.yasara.org/papers.htm YASARA scientific papers]</ref> The free version of YASARA<ref>[http://www.yasara.org/viewdl/ YASARA-View]</ref> is well suited to bioinformatics education. A series of freely available bioinformatics courses exist that use this software. thumb|Students working on an educational task using YASARA.|300px See the Center for Molecular and Biomolecular Informatics (CMBI) education pages for a series of examples.<ref>[http://swift.cmbi.ru.nl/teach/ CMBI education pages]{{Dead link|date=December 2025 |bot=InternetArchiveBot }}</ref>
*{{cite journal |vauthors=Krieger E, Koraimann G, Vriend G |title=Increasing the precision of comparative models with YASARA NOVA—a self-parameterizing force field |journal=Proteins |volume=47 |issue=3 |pages=393–402 |date=May 2002 |pmid=11948792 |doi=10.1002/prot.10104|doi-access=free }} *Modelling:<br/>{{cite journal |vauthors=Krieger E, Vriend G |title=Models@Home: distributed computing in bioinformatics using a screensaver based approach |journal=Bioinformatics |volume=18 |issue=2 |pages=315–8 |date=Feb 2002 |pmid=11847079 |url=http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=11847079 |doi=10.1093/bioinformatics/18.2.315|doi-access=free }} *Dynamics:<br/>{{cite journal |vauthors=Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G |title=Making optimal use of empirical energy functions: force-field parameterization in crystal space |journal=Proteins |volume=57 |issue=4 |pages=678–83 |date=Dec 2004 |pmid=15390263 |doi=10.1002/prot.20251|citeseerx=10.1.1.472.6529 }}
thumb|Learning to dock ligands with YASARA.|200px
==See also== * List of molecular graphics systems * Comparison of software for molecular mechanics modeling * Molecular graphics * Molecular design software
==References== {{Reflist}}
==External links== {{Official website|www.yasara.org}}
Category:Molecular modelling software Category:Molecular dynamics software
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