{{Short description|none}} Functional connectivity software is used to study functional properties of the connectome using functional Magnetic Resonance Imaging (fMRI) data in the resting state and during tasks. To access many of these software applications visit the NIH funded Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) site.
{| class="wikitable sortable" |- ! Name !! Description !! Programming language !! Is part of / requires !! Developer/Organization |- | CONN<ref>{{cite journal | last1 = Whitfield-Gabrieli | first1 = S. | last2 = Nieto-Castanon | first2 = A. | year = 2012 | title = Conn: a functional connectivity toolbox for correlated and anticorrelated brainnetworks | journal = Brain Connect | volume = 2 | issue = 3| pages = 125–141 | doi=10.1089/brain.2012.0073| pmid = 22642651 }}</ref> || Functional connectivity analysis and display tool || Matlab || SPM || <small>McGovern Institute for Brain Research, Massachusetts Institute of Technology: MIT</small> |- | DCM<ref>{{cite journal | last1 = Friston | first1 = K. J. | last2 = Kahan | first2 = J. | last3 = Biswal | first3 = B. | last4 = Razi | first4 = A. | year = 2014 | title = A DCM for resting state fMRI | journal = NeuroImage | volume = 94 | issue = 100 | pages = 396–407 | doi=10.1016/j.neuroimage.2013.12.009| pmid = 24345387 | pmc = 4073651 }}</ref>|| Dynamic Causal Modelling analysis || Matlab || SPM || <small>Wellcome Trust Centre for Neuroimaging, University College London</small> |- | FATCAT<ref>{{cite journal | last1 = Taylor | first1 = P. A. | last2 = Saad | first2 = Z. S. | year = 2013 | title = FATCAT: (an efficient) Functional and Tractographic Connectivity Analysis Toolbox | journal = Brain Connect | volume = 3 | issue = 5| pages = 523–535 | doi=10.1089/brain.2013.0154| pmid = 23980912 | pmc = 3796333 }}</ref>|| Functional and tractographic connectivity analysis || C || AFNI || <small>Scientific and Statistical Computing Core, National Institute of Mental Health: NIMH</small> |- | FSFC<ref>{{cite journal | last1 = Fischl | first1 = B. FreeSurfer | year = 2012 | title = FreeSurfer| doi = 10.1016/j.neuroimage.2012.01.021 | pmid = 22248573 | journal = NeuroImage | volume = 62 | issue = 2| pages = 774–781 | pmc = 3685476 }}</ref>|| Seed-based functional connectivity analysis || Shell || FreeSurfer || <small>Martinos Center for Biomedical Imaging</small> |- | MELODIC<ref>{{cite journal | last1 = Beckmann | first1 = C. F. | last2 = DeLuca | first2 = M. | last3 = Devlin | first3 = J. T. | last4 = Smith | first4 = S. M. | year = 2005 | title = Investigations into resting-state connectivity using independentcomponent analysis | journal = Philos. Trans. R. Soc. Lond. B Biol. Sci.| volume = 360 | issue = 1457| pages = 1001–1013 | doi=10.1098/rstb.2005.1634| pmid = 16087444 | pmc = 1854918 }}</ref>|| Independent component analysis || C || FSL || <small>Functional Magnetic Resonance Imaging of the Brain Analysis Group, Oxford University</small> |}
==See also== * List of neuroimaging software * Functional connectivity * Neuroimaging
==References== {{reflist}}
{{DEFAULTSORT:Functional connectivity software}} Category:Neuroimaging software Category:Lists of software