# Edaphobacter

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> Markdown URL: https://mediated.wiki/source/Edaphobacter.md
> Source: https://en.wikipedia.org/wiki/Edaphobacter
> Source revision: 1339219988
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{{Short description|Genus of bacterium}}
{{Automatic taxobox
| image = Edaphobacter_modestus.jpg
| image_caption = Edaphobacter modestus
| taxon = Edaphobacter
| image_alt = Edaphobacter modestus
| authority = Koch ''et al.'' 2008
| type_species = ''[Edaphobacter modestus](/source/Edaphobacter_modestus)'' 
| type_species_authority = {{small|Koch et al. 2008}}
| subdivision_ranks = [Species](/source/Species)
| subdivision =
* ''E. acidisoli''
* ''[E. aggregans](/source/Edaphobacter_aggregans)''
* ''E.  bradus''
* ''E.  dinghuensis''
* ''E.  flagellatus''
* ''E.  lichenicola''
* ''[E. modestus](/source/Edaphobacter_modestus)''
* ''E.  paludis''
}}

'''''Edaphobacter''''' is a genus of [Gram-negative](/source/Gram-negative), rod shaped bacteria.<ref>{{cite journal|last=Koch|first=I. H.|author2=Gich, F. |author3=Dunfield, P. F. |author4= Overmann, J. |title=Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils|journal=International Journal of Systematic and Evolutionary Microbiology|date=1 May 2008|volume=58|issue=5|pages=1114–1122|doi=10.1099/ijs.0.65303-0 |pmid=18450699|doi-access=free}}</ref> It contains seven species:<ref name=LPSN></ref>

==Phylogeny==
The currently accepted taxonomy is based on the [List of Prokaryotic names with Standing in Nomenclature](/source/List_of_Prokaryotic_names_with_Standing_in_Nomenclature) (LPSN)<ref name=LPSN>{{lpsn3|genus/Edaphobacter|Edaphobacter}}</ref> and [National Center for Biotechnology Information](/source/National_Center_for_Biotechnology_Information) (NCBI).<ref name=NCBI>{{cite web |author=Schoch CL |display-authors=et al. |url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?command=show&mode=tree&id=388463&lvl=3 |title=Edaphobacter |accessdate=2025-06-05 |publisher=[National Center for Biotechnology Information](/source/National_Center_for_Biotechnology_Information) (NCBI) taxonomy database}}</ref>

{| class="wikitable"
|-
! colspan=1 | 16S rRNA based [LTP](/source/The_All-Species_Living_Tree_Project)_10_2024<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}</ref><ref>{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}</ref>
! colspan=1 | 120 marker proteins based [GTDB](/source/Genome_Taxonomy_Database) 10-RS226<ref name="about">{{cite web |title=GTDB release 10-RS226 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[Genome Taxonomy Database](/source/Genome_Taxonomy_Database)|access-date=1 May 2025}}</ref><ref name="tree_bac">{{cite web |title=bac120_r226.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release226/226.0/auxillary_files/bac120_r226.sp_labels.tree |website=[Genome Taxonomy Database](/source/Genome_Taxonomy_Database)|access-date=1 May 2025}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[Genome Taxonomy Database](/source/Genome_Taxonomy_Database)|access-date=1 May 2025}}</ref>
|- 
| style="vertical-align:top|
{{Clade | style=font-size:90%;line-height:90%
|1={{clade
  |1=''[Bryocella elongata](/source/Bryocella_elongata)''
  |2={{clade
    |1={{clade
    |label1=''[Granulicella](/source/Granulicella)''
    |1={{clade
      |1=''G. mallensis''
      |2={{clade
        |1=''G. acidiphila''
        |2={{clade
          |1=''G. cerasi''
          |2=''G. paludicola''
           }}
         }}
       }}
       }}
    |2={{clade
      |1={{clade
      |label1=''Edaphobacter''
      |1={{clade
        |1=''E. acidisoli''
        |2={{clade
          |1=''E. bradus''
          |2={{clade
            |1=''[E. aggregans](/source/Edaphobacter_aggregans)''
            |2={{clade
              |1=''E. flagellatus''
              |2=''[E. modestus](/source/Edaphobacter_modestus)''
               }}
             }}
           }}
         }}
         }}
      |2={{clade
        |1=''Edaphobacter dinghuensis''
        |2={{clade
          |1=''Edaphobacter lichenicola''
          |2={{clade
          |label1=''Granulicella''~
          |1={{clade
            |1=''Granulicella sibirica''
            |2={{clade
              |1=''Granulicella aggregans''
              |2={{clade
                |1={{clade
                  |1=''Granulicella rosea''
                  |2=''Granulicella tundricola''
                   }}
                |2={{clade
                  |1=''Granulicella pectinivorans''
                  |2={{clade
                    |1=''Granulicella arctica''
                    |2=''Granulicella sapmiensis''
                     }}
                   }}
                 }}
               }}
             }}
             }}
           }}
         }}
       }}
     }}
   }}
}}
|
{{Clade|style=font-size:90%; line-height:90%
|1={{clade
  |label1=''[Granulicella](/source/Granulicella)''
  |1={{clade
    |1=''G. cerasi'' <small>Yamada et al. 2014</small>
    |2={{clade
      |1={{clade
        |1=''[Bryocella elongata](/source/Bryocella_elongata)'' <small>Dedysh et al. 2012</small>
        |2=''G. paludicola'' <small>Pankratov & Dedysh 2010</small>
         }}
      |2={{clade
        |1=''G. mallensis'' <small>Mannisto et al. 2012</small>
        |2=''G. sapmiensis'' <small>Mannisto et al. 2012</small>
         }}
       }}
     }}
  |label2=''Edaphobacter''
  |2={{clade
    |1={{clade
      |1={{clade
        |1=''Granulicella pectinivorans'' <small>Pankratov & Dedysh 2010</small>
        |2=''Granulicella sibirica'' <small>Oshkin et al. 2019</small>
         }}
      |2={{clade
        |1=''Granulicella rosea'' <small>Pankratov & Dedysh 2010</small>
        |2=''Granulicella tundricola'' <small>Mannisto et al. 2012</small>
         }}
       }}
    |2={{clade
      |1=''Granulicella aggregans'' <small>Pankratov & Dedysh 2010</small>
      |2={{clade
        |1=''Granulicella arctica'' <small>Mannisto et al. 2012</small>
        |2={{clade
          |1={{clade
            |1=''E. lichenicola'' <small>Belova et al. 2018</small>
            |2={{clade
              |1=''Tunturiibacter psychrotolerans'' <small>corrig. Messyasz et al. 2024</small>
              |2={{clade
                |1=''Tunturiibacter empetritectus'' <small>corrig. Messyasz et al. 2024</small>
                |2=''Tunturiibacter gelidoferens'' <small>corrig. Messyasz et al. 2024</small>
                 }}
               }}
             }}
          |2={{clade
            |1={{clade
              |1=''E. acidisoli'' <small>Xia et al. 2017b</small>
              |2={{clade
                |1=''E. dinghuensis'' <small>Wang et al. 2016</small>
                |2=''E. paludis'' <small>Huber et al. 2024</small>
                 }}
               }}
            |2={{clade
              |1=''E. bradus'' <small>Xia et al. 2018b</small>
              |2={{clade
                |1=''[E. modestus](/source/Edaphobacter_modestus)'' <small>Koch et al. 2008</small>
                |2={{clade
                  |1=''[E. aggregans](/source/Edaphobacter_aggregans)'' <small>Koch et al. 2008</small>
                  |2=''E. flagellatus'' <small>Xia et al. 2018b</small>
                   }}
                 }}
               }}
             }}
           }}
         }}
       }}
     }}
   }}
}}
|}

== See also ==
* [List of bacterial orders](/source/List_of_bacterial_orders)
* [List of bacteria genera](/source/List_of_bacteria_genera)

== References ==
{{Reflist}}

<!--== Further reading ==
{{CiteQ|Q63822850}}-->
{{Bacteria classification}}
{{Taxonbar|from=Q21078645}}
Category:Acidophiles
Category:Acidobacteriota
Category:Bacteria described in 2008
Category:Bacteria genera

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Adapted from the Wikipedia article [Edaphobacter](https://en.wikipedia.org/wiki/Edaphobacter) by Wikipedia contributors ([contributor history](https://en.wikipedia.org/wiki/Edaphobacter?action=history)). Available under [Creative Commons Attribution-ShareAlike 4.0 International](https://creativecommons.org/licenses/by-sa/4.0/). Changes may have been made.